PathwayMaxMin

A function to obtain the hypothetical max and min activation status of selected pathway for a given scRNA seq data set

Usage

PathwayMaxMin(expr_data, pathwaydata)

Arguments

expr_data

Pre-processed gene-by-cell matrix (z-scored, pathway-filtered)

pathwaydata

Pathway data outcome from LoadPathway()

Value

A data.frame with pathway.on and pathway.off values per gene

Examples

if (FALSE) { # \dontrun{
pathwaydata <- LoadPathway("Hypoxia_6hr", "human")
matrix_filtered <- DataPreProcess(expr_data, pathwaydata)
PathwayMaxMin(matrix_filtered, pathwaydata)
} # }