Skip to contents

ListPathway List available pathways or pathway metadata

ListPathway.Rd

Reads the "SUMMARY" sheet from Pathway_Database_Combined.xlsx. Behaviour depends on the query argument:

  • NULL: returns the full summary table as a tibble.

  • "Pathway": returns a sorted character vector of unique pathway names.

  • A valid pathway name (e.g. "WNT", "NOTCH"): returns the subset of rows for that pathway as a tibble.

Usage

ListPathway(query = NULL, drop_empty = TRUE)

Arguments

query

Optional character string. One of NULL, "Pathway", or a valid pathway name. Default NULL.

drop_empty

Logical; if TRUE, removes entries with 0 genes. Default TRUE.

Value

A tibble (full table or pathway subset) or a character vector (when query = "Pathway").

Examples

if (FALSE) { # \dontrun{
ListPathway()
ListPathway("Pathway")
ListPathway("WNT")
} # }